#3593: Error in v.stream.order add-on, segmentation fault
-------------------------+---------------------------------
Reporter: jradinger | Owner: grass-dev@…
Type: defect | Status: new
Priority: normal | Milestone:
Component: Addons | Version: svn-releasebranch74
Keywords: | CPU: Unspecified
Platform: Unspecified |
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The `v.stream.order` add-on in GRASS 7.4.1 (freshly installed, bundled
version from [http://grassmac.wikidot.com/downloads\]) on MacOS 10.13.5
does not work, but causes an error: segmentation fault 11. The last time I
used this add-on was, I think with GRASS 7.3 (where it was working).
My current setup:
GRASS version: 7.4.1
GRASS SVN revision: r72807M
Build date: 2018-06-13
Build platform: x86_64-apple-darwin17.6.0
GDAL: 2.0.0
PROJ.4: 5.1.0
GEOS: 3.6.2
SQLite: 3.19.3
Python: 2.7.15
wxPython: 4.0.0
Platform: Darwin-17.6.0-x86_64-i386-64bit
I tried the example from the manual of v.stream.order that uses the North
Carolina example dataset
([https://grass.osgeo.org/grass74/manuals/addons/v.stream.order.html\]):
{{{
# We need to generate 4 outlet points that will lead to
# 4 stream networks and therefore 4 output vector maps
cat > points.csv << EOF
640781.56098|214897.033189
642228.347134|214979.370612
638470.926725|214984.99142
645247.580918|223346.644849
EOF
v.in.ascii output=streams_outlets input=points.csv x=1 y=2
v.stream.order input=streams@PERMANENT points=streams_outlets \
output=streams_order threshold=25 order=strahler,shreve
}}}
and I receive following error (with debug=3):
{{{
<s7):~ > v.stream.order input=streams@PERMANENT points=streams_outlets \
> output=streams_order threshold=25 order=strahler,shreve
D2/3: filename =
/Users/Johannes_Radinger/Library/GRASS/7.4/Modules/scripts/v.stream.order
D1/3: G_set_program_name(): v.stream.order
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/vector/streams_order
D1/3: G_find_vector2(): name=streams mapset=PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams
D1/3: G_find_vector2(): name=streams mapset=PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams
D1/3: Vect__open_old(): name = streams, mapset = PERMANENT, layer = 1,
update = 0, head_only = 0, is_tmp = 0
D1/3: Vect_set_thresh(): thresh = 0.000000
D3/3: dig_init_plus()
D1/3: dig_spidx_init(), 2 dims
D3/3: dig_cidx_init()
D1/3: G_find_vector2(): name=streams mapset=PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams
D1/3: Map: name = streams, mapset = PERMANENT, temporary = 0
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/frmt
D1/3: Vector format: 0 (native)
D1/3: Vect_set_thresh(): thresh = 0.000000
D1/3: Vect__read_head(): vector = streams@PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/head
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/head
D2/3: file open: read (mode = r)
D1/3: Vect_set_thresh(): thresh = 0.000000
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/WIND
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/WIND
D2/3: file open: read (mode = r)
D2/3: G__read_Cell_head
D2/3: G__read_Cell_head_array
D3/3: region item: proj: 99
D3/3: region item: zone: 0
D3/3: region item: north: 221230
D3/3: region item: south: 219580
D3/3: region item: east: 639530
D3/3: region item: west: 637740
D3/3: region item: cols: 179
D3/3: region item: rows: 165
D3/3: region item: e-w resol: 10
D3/3: region item: n-s resol: 10
D3/3: region item: top: 1
D3/3: region item: bottom: 0
D3/3: region item: cols3: 179
D3/3: region item: rows3: 165
D3/3: region item: depths: 1
D3/3: region item: e-w resol3: 10
D3/3: region item: n-s resol3: 10
D3/3: region item: t-b resol: 1
D1/3: Level request = 2
D1/3: Vect_open_topo(): name = streams mapset = PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/topo
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/topo
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/topo
D2/3: file open: read (mode = r)
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: get coor info: /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: Vect_coor_info(): Info->size = 2747992, Info->mtime = 1198040776
D2/3: Topo header: file version 5.1 , supported from GRASS version 5.1
D2/3: byte order 0
D2/3: header size 142
D2/3: topo off_t size = 4
D2/3: with_z 0
D2/3: coor size 2747992
D1/3: Topo head: coor size = 2747992, coor mtime = 0
D1/3: dig_load_plus()
D2/3: dig_free_plus()
D2/3: dig_free_plus_nodes()
D2/3: dig_free_plus_lines()
D2/3: dig_free_plus_areas()
D2/3: dig_free_plus_isles()
D2/3: dig_cidx_free()
D3/3: dig_init_plus()
D1/3: dig_spidx_init(), 2 dims
D3/3: dig_cidx_init()
D2/3: Topo header: file version 5.1 , supported from GRASS version 5.1
D2/3: byte order 0
D2/3: header size 142
D2/3: topo off_t size = 4
D2/3: with_z 0
D2/3: coor size 2747992
D1/3: Vect_open_sidx(): name = streams mapset= PERMANENT mode = old
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/sidx
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/sidx
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/sidx
D2/3: file open: read (mode = r)
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: get coor info: /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: Vect_coor_info(): Info->size = 2747992, Info->mtime = 1198040776
D1/3: dig_spidx_init(), 2 dims
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order
D2/3: G__temp_element(): .tmp/eco4.udg.edu (tmp=0)
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.0
D2/3: G_tempfile_pid(): /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.0
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order
D2/3: G__temp_element(): .tmp/eco4.udg.edu (tmp=0)
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.1
D2/3: G_tempfile_pid(): /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.1
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order
D2/3: G__temp_element(): .tmp/eco4.udg.edu (tmp=0)
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.2
D2/3: G_tempfile_pid(): /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.2
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order
D2/3: G__temp_element(): .tmp/eco4.udg.edu (tmp=0)
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.3
D2/3: G_tempfile_pid(): /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/test_stream_order/.tmp/eco4.udg.edu/76467.3
D2/3: Spidx header: file version 5.1 , supported from GRASS version 5.1
D2/3: byte order 0
D2/3: header size 113
D2/3: with_z 0
D2/3: coor size 2747992
D1/3: Sidx head: coor size = 2747992, coor mtime = 0
D2/3: Vect_cidx_open(): name = streams mapset= PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/cidx
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/cidx
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/cidx
D2/3: file open: read (mode = r)
D3/3: dig_read_cidx()
D2/3: dig_cidx_free()
D3/3: dig_cidx_init()
D3/3: Cidx header: file version 5.0 , supported from GRASS version 5.0
D3/3: byte order 0
D3/3: header size 9
D1/3: V1_open_old_nat(): name = streams mapset = PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D2/3: file open: read (mode = r)
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: get coor info: /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: Vect_coor_info(): Info->size = 2747992, Info->mtime = 1198040776
D2/3: dig__read_head(): name = 'streams'
D2/3: Coor header: file version 5.1 , supported from GRASS version 5.1
D2/3: byte order 0
D2/3: header size 14
D2/3: with_z 0
D2/3: coor size 2747992
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: get coor info: /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/coor
D1/3: Vect_coor_info(): Info->size = 2747992, Info->mtime = 1198040776
D1/3: coor size in head = 2747992, real coor file size= 2747992
D2/3: dig_file_load ()
D2/3: requested mode = 2
D2/3: size = 2747992
D2/3: file was not loaded to the memory
D1/3: Vect__open_old(): vector opened on level 2
D1/3: Vect_read_dblinks(): map = streams, mapset = PERMANENT
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/dbln
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/dbln
D2/3: file open: read (mode = r)
D1/3: dbln:
1/streams|streams|cat|$GISDBASE/$LOCATION_NAME/$MAPSET/sqlite/sqlite.db|sqlite
D3/3: Field number <1>, name <streams>
D3/3: Vect_check_dblink: field 1, name streams
D1/3: field = 1 name = streams, table = streams, key = cat, database =
$GISDBASE/$LOCATION_NAME/$MAPSET/sqlite/sqlite.db, driver = sqlite
D1/3: Dblinks read
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/hist
D2/3: G_file_name(): path = /Users/Johannes_Radinger/Documents/GRASS-
GIS/nc_spm_08_grass7/PERMANENT/vector/streams/hist
D2/3: file open: read (mode = r)
D1/3: Vect_Rewind(): name = streams level = 2
Segmentation fault: 11
}}}
Any ideas?
--
Ticket URL: <https://trac.osgeo.org/grass/ticket/3593>
GRASS GIS <https://grass.osgeo.org>