[GRASS-dev] r.gwflow and r3.gwflow compile errors

Scott_Mitchell · February 8, 2007, 9:44pm

I just updated my grass6-cvs to check out the r.li - but two other modules didn't compile, the new gwflow.

[smitch@gracilis r.gwflow]$ make
gcc -L/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-linux-gnu/lib -Wl,--export-dynamic -Wl,-rpath-link,/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-linux-gnu/lib -DPACKAGE=\""grassmods"\" -o /fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-linux-gnu/bin/r.gwflow OBJ.i686-pc-linux-gnu/main.o -lgrass_gis -lgrass_datetime -lz -lm -lz
OBJ.i686-pc-linux-gnu/main.o: In function `create_solve_les':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503: undefined reference to `N_assemble_les_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503: undefined reference to `N_assemble_les_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:514: undefined reference to `N_solver_bicgstab'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:517: undefined reference to `N_solver_lu'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:511: undefined reference to `N_solver_cg'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:520: undefined reference to `N_solver_gauss'
OBJ.i686-pc-linux-gnu/main.o: In function `copy_result':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:484: undefined reference to `N_put_array_2d_value_dcell'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:468: undefined reference to `N_get_array_2d_value_dcell'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:477: undefined reference to `N_get_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `write_result':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:431: undefined reference to `N_get_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `fill_array_2d':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:387: undefined reference to `N_put_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `main':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:215: undefined reference to `N_alloc_geom_data'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:225: undefined reference to `N_alloc_les_callback_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226: undefined reference to `N_callback_gwflow_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226: undefined reference to `N_set_les_callback_2d_func'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:229: undefined reference to `N_alloc_gwflow_data2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:326: undefined reference to `N_free_les'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:328: undefined reference to `N_free_gwflow_data2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:290: undefined reference to `N_free_les'
collect2: ld returned 1 exit status
make: *** [/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-linux-gnu/bin/r.gwflow] Error 1

Same general problem in the 3D version. I do have the header files for these functions, as far as I can tell.

Does this look familiar to anyone? Suggestions?

Soeren_Gebbert1 · February 8, 2007, 10:03pm

Hi,
it looks like the linker is not able to find the new gpde library.
Maybe the lib was not build?
I will try to reproduce and fix this.

Maybe i should remove the new modules from the Makefiles .... .

Regards
Soeren

Am Donnerstag, 8. Februar 2007 22:44 schrieb Scott Mitchell:

I just updated my grass6-cvs to check out the r.li - but two other
modules didn't compile, the new gwflow.

[smitch@gracilis r.gwflow]$ make
gcc -L/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-linux-gnu/
lib -Wl,--export-dynamic -Wl,-rpath-link,/fc2root/home/smitch/src/
cvsgrass/grass6/dist.i686-pc-linux-gnu/lib -DPACKAGE=
\""grassmods"\" -o /fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-
pc-linux-gnu/bin/r.gwflow OBJ.i686-pc-linux-gnu/main.o -lgrass_gis -
lgrass_datetime -lz -lm -lz
OBJ.i686-pc-linux-gnu/main.o: In function `create_solve_les':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503:
undefined reference to `N_assemble_les_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503:
undefined reference to `N_assemble_les_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:514:
undefined reference to `N_solver_bicgstab'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:517:
undefined reference to `N_solver_lu'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:511:
undefined reference to `N_solver_cg'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:520:
undefined reference to `N_solver_gauss'
OBJ.i686-pc-linux-gnu/main.o: In function `copy_result':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:484:
undefined reference to `N_put_array_2d_value_dcell'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:468:
undefined reference to `N_get_array_2d_value_dcell'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:477:
undefined reference to `N_get_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `write_result':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:431:
undefined reference to `N_get_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `fill_array_2d':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:387:
undefined reference to `N_put_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `main':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:215:
undefined reference to `N_alloc_geom_data'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:225:
undefined reference to `N_alloc_les_callback_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226:
undefined reference to `N_callback_gwflow_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226:
undefined reference to `N_set_les_callback_2d_func'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:229:
undefined reference to `N_alloc_gwflow_data2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:326:
undefined reference to `N_free_les'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:328:
undefined reference to `N_free_gwflow_data2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:290:
undefined reference to `N_free_les'
collect2: ld returned 1 exit status
make: *** [/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-
linux-gnu/bin/r.gwflow] Error 1

Same general problem in the 3D version. I do have the header files
for these functions, as far as I can tell.

Does this look familiar to anyone? Suggestions?

_______________________________________________
grass-dev mailing list
grass-dev@grass.itc.it
http://grass.itc.it/mailman/listinfo/grass-dev

Scott_Mitchell · February 8, 2007, 10:12pm

On 8 Feb 2007, at 17:03, Soeren Gebbert wrote:

Hi,
it looks like the linker is not able to find the new gpde library.
Maybe the lib was not build?

I have object files in the lib/gpde/OBJ.i686-pc-linux-gnu/ directory, but nothing with gpde in the name in dist.i686-pc-linux-gnu/lib

I will try to reproduce and fix this.

Maybe i should remove the new modules from the Makefiles .... .

Regards
Soeren

Am Donnerstag, 8. Februar 2007 22:44 schrieb Scott Mitchell:

I just updated my grass6-cvs to check out the r.li - but two other
modules didn't compile, the new gwflow.

[smitch@gracilis r.gwflow]$ make
gcc -L/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-linux-gnu/
lib -Wl,--export-dynamic -Wl,-rpath-link,/fc2root/home/smitch/src/
cvsgrass/grass6/dist.i686-pc-linux-gnu/lib -DPACKAGE=
\""grassmods"\" -o /fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-
pc-linux-gnu/bin/r.gwflow OBJ.i686-pc-linux-gnu/main.o -lgrass_gis -
lgrass_datetime -lz -lm -lz
OBJ.i686-pc-linux-gnu/main.o: In function `create_solve_les':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503:
undefined reference to `N_assemble_les_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503:
undefined reference to `N_assemble_les_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:514:
undefined reference to `N_solver_bicgstab'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:517:
undefined reference to `N_solver_lu'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:511:
undefined reference to `N_solver_cg'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:520:
undefined reference to `N_solver_gauss'
OBJ.i686-pc-linux-gnu/main.o: In function `copy_result':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:484:
undefined reference to `N_put_array_2d_value_dcell'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:468:
undefined reference to `N_get_array_2d_value_dcell'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:477:
undefined reference to `N_get_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `write_result':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:431:
undefined reference to `N_get_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `fill_array_2d':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:387:
undefined reference to `N_put_array_2d_value_dcell'
OBJ.i686-pc-linux-gnu/main.o: In function `main':
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:215:
undefined reference to `N_alloc_geom_data'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:225:
undefined reference to `N_alloc_les_callback_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226:
undefined reference to `N_callback_gwflow_2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226:
undefined reference to `N_set_les_callback_2d_func'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:229:
undefined reference to `N_alloc_gwflow_data2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:326:
undefined reference to `N_free_les'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:328:
undefined reference to `N_free_gwflow_data2d'
/fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:290:
undefined reference to `N_free_les'
collect2: ld returned 1 exit status
make: *** [/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-
linux-gnu/bin/r.gwflow] Error 1

Same general problem in the 3D version. I do have the header files
for these functions, as far as I can tell.

Does this look familiar to anyone? Suggestions?

_______________________________________________
grass-dev mailing list
grass-dev@grass.itc.it
http://grass.itc.it/mailman/listinfo/grass-dev

Soeren_Gebbert1 · February 8, 2007, 10:29pm

Am Donnerstag, 8. Februar 2007 23:12 schrieb Scott Mitchell:

On 8 Feb 2007, at 17:03, Soeren Gebbert wrote:
> Hi,
> it looks like the linker is not able to find the new gpde library.
> Maybe the lib was not build?

I have object files in the lib/gpde/OBJ.i686-pc-linux-gnu/
directory, but nothing with gpde in the name in dist.i686-pc-linux-
gnu/lib

I just downloaded the latest cvs version, configured and compiled it.
No problems detected.

Maybe if you do a "make distclean, configure, make" the problem will be
solved? Because to get the library to work i needed to modify the
Grass.make.in in grass.
So after a new configuration everything should be fine.

Best regards
Soeren

> I will try to reproduce and fix this.
>
> Maybe i should remove the new modules from the Makefiles .... .
>
> Regards
> Soeren
>
> Am Donnerstag, 8. Februar 2007 22:44 schrieb Scott Mitchell:
>> I just updated my grass6-cvs to check out the r.li - but two other
>> modules didn't compile, the new gwflow.
>>
>> [smitch@gracilis r.gwflow]$ make
>> gcc -L/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-linux-
>> gnu/
>> lib -Wl,--export-dynamic -Wl,-rpath-link,/fc2root/home/smitch/src/
>> cvsgrass/grass6/dist.i686-pc-linux-gnu/lib -DPACKAGE=
>> \""grassmods"\" -o /fc2root/home/smitch/src/cvsgrass/grass6/
>> dist.i686-
>> pc-linux-gnu/bin/r.gwflow OBJ.i686-pc-linux-gnu/main.o -lgrass_gis -
>> lgrass_datetime -lz -lm -lz
>> OBJ.i686-pc-linux-gnu/main.o: In function `create_solve_les':
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503:
>> undefined reference to `N_assemble_les_2d'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:503:
>> undefined reference to `N_assemble_les_2d'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:514:
>> undefined reference to `N_solver_bicgstab'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:517:
>> undefined reference to `N_solver_lu'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:511:
>> undefined reference to `N_solver_cg'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:520:
>> undefined reference to `N_solver_gauss'
>> OBJ.i686-pc-linux-gnu/main.o: In function `copy_result':
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:484:
>> undefined reference to `N_put_array_2d_value_dcell'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:468:
>> undefined reference to `N_get_array_2d_value_dcell'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:477:
>> undefined reference to `N_get_array_2d_value_dcell'
>> OBJ.i686-pc-linux-gnu/main.o: In function `write_result':
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:431:
>> undefined reference to `N_get_array_2d_value_dcell'
>> OBJ.i686-pc-linux-gnu/main.o: In function `fill_array_2d':
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:387:
>> undefined reference to `N_put_array_2d_value_dcell'
>> OBJ.i686-pc-linux-gnu/main.o: In function `main':
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:215:
>> undefined reference to `N_alloc_geom_data'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:225:
>> undefined reference to `N_alloc_les_callback_2d'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226:
>> undefined reference to `N_callback_gwflow_2d'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:226:
>> undefined reference to `N_set_les_callback_2d_func'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:229:
>> undefined reference to `N_alloc_gwflow_data2d'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:326:
>> undefined reference to `N_free_les'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:328:
>> undefined reference to `N_free_gwflow_data2d'
>> /fc2root/home/smitch/src/cvsgrass/grass6/raster/r.gwflow/main.c:290:
>> undefined reference to `N_free_les'
>> collect2: ld returned 1 exit status
>> make: *** [/fc2root/home/smitch/src/cvsgrass/grass6/dist.i686-pc-
>> linux-gnu/bin/r.gwflow] Error 1
>>
>> Same general problem in the 3D version. I do have the header files
>> for these functions, as far as I can tell.
>>
>> Does this look familiar to anyone? Suggestions?
>>
>>
>> _______________________________________________
>> grass-dev mailing list
>> grass-dev@grass.itc.it
>> http://grass.itc.it/mailman/listinfo/grass-dev

_______________________________________________
grass-dev mailing list
grass-dev@grass.itc.it
http://grass.itc.it/mailman/listinfo/grass-dev

H_B · February 9, 2007, 1:20am

Soeren Gebbert wrote:

it looks like the linker is not able to find the new gpde library.
Maybe the lib was not build?
I will try to reproduce and fix this.

They build fine for me. Scott, did you run "make distclean" before
rebuilding from the latest CVS?

Maybe i should remove the new modules from the Makefiles .... .

The development version is allowed to be broken as long as someone is
actively working on the problem.

Hamish

Markus_Neteler1 · February 9, 2007, 8:08am

Hamish wrote on 02/09/2007 02:20 AM:

Soeren Gebbert wrote:


it looks like the linker is not able to find the new gpde library.
Maybe the lib was not build?
I will try to reproduce and fix this.

They build fine for me. Scott, did you run "make distclean" before
rebuilding from the latest CVS?

Right, this is needed since the initial "make" step after "configure"
copies some include files into the right place.
I got into the same trap first, then remembered
"if in doubt, run'make distclean'"

which solved the problem. I have compiled it successfully on 32 and 64bit machines.

Markus

Scott_Mitchell · February 9, 2007, 2:23pm

Ah, yes, I forgot that one, sorry. I only did make clean. I blame the head cold Rebuilding...

Sure enough, fixed. Thanks, all!

Scott

On 9 Feb 2007, at 03:08, Markus Neteler wrote:

Hamish wrote on 02/09/2007 02:20 AM:

Soeren Gebbert wrote:

it looks like the linker is not able to find the new gpde library.
Maybe the lib was not build?
I will try to reproduce and fix this.

They build fine for me. Scott, did you run "make distclean" before
rebuilding from the latest CVS?

Right, this is needed since the initial "make" step after "configure"
copies some include files into the right place.
I got into the same trap first, then remembered
"if in doubt, run'make distclean'"

which solved the problem. I have compiled it successfully on 32 and 64bit machines.

Markus