[GRASS-user] Problem with Lidar Tools

Dear list,

I am quite new to Grass and need to generate a DSM from Lidar data. Here is
my workflow so far:

v.in.ascii input=f:\lidar_test\single.csv output=single fs=, x=1 y=2 z=3 -z
-b -t --o
v.build single
g.region vect=single
v.in.ascii input=f:\lidar_test\first.csv output=first fs=, x=1 y=2 z=3 -z -b
-t --o
v.outlier input=single output=inlier_s outlier=outlier_s thres_o=5 soe=1
son=1 lambda_i=0.1 --o
v.outlier input=first output=inlier_f outlier=outlier_f thres_o=5 soe=1
son=1 lambda_i=0.1 --o
v.lidar.edgedetection input=inlier_s output=edgedetected see=400 sen=400
lambda_g=0.01 tgh=6 tgl=3 theta_g=0.26 lambda_r=1 --o
v.lidar.growing input=edgedetected output=growing first=inlier_f tj=0.25
td=0.6 --o
v.lidar.correction input=growing output=classified terrain=terrain sce=5
scn=5 lambda_c=1 tch=2 tcl=1 --o
v.lidar.correction input=classified output=classified_it2
terrain=terrain_it2 sce=5 scn=5 lambda_c=1 tch=2 tcl=1 --o
v.build terrain_it2
v.out.ogr in=terrain_it2 dsn=F:\lidar_test\terrain_it2 format=ESRI_Shapefile
type=point lco=SHPT=POINTZ -e

v.lidar.edgedetection classifies the data into cat 1 and cat 2 (=Terrain or
Edge ?). This seams to work. The next step is v.lidar.growing. This tool
should classify into 4 categories: TERRAIN SINGLE PULSE, TERRAIN DOUBLE
PULSE, OBJECT SINGLE PULSE or OBJECT DOUBLE PULSE. But this does not happen.
The cats still remain the same (cat1 and cat2) and the output looks
identical to the output from v.lidar.edgedetection. v.lidar.growing seams to
have no effect.
Am I doing something wrong ?

I have another problem with the parameters of the lidar tools (although I
read Brovellis "Managing and processing LIDAR data within GRASS"). Can you
give me some hints how to adjust the default values to very high res Lidar
data (=50 points/m²). I raised see and sen parameter in
v.lidar.edgedetection to 400 with the result, that the detected edges are
now so wide, that they cover complete buildings. This way I can get rid of
the most buildings but the result is not really satisfying and I guess the
problem is false classification of v.lidar.growing

Let me know if you need more infos.

I am using GRass 6.3.0 on Windows. Can I expect improvements switching to
6.4 or switching to Linux ?

Thank you very much !!

kaipi

--
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Hi Kaipi,

I've only been doing rural LiDAR processing, so can't help regards building removal for the DTM.

One thing that isn't mentioned in the Brovelli, 2004 article or the online documention on the wiki, is that spline 'step' relates to metres (1 step = 1m). Obvious I know, but wasn't to me when I started fiddling with the parametersand the LiDAR data for the first time. Therefore:
-see and sen parameter in v.lidar.edgedetection to 400
is 400m! and hence:
-the detected edges are now so wide, that they cover complete buildings

The spline step parameters should be double the average distance between points. So for 50pts/m² the spline steps chould be 0.04 (2*(1/50)) for example. Play with these either side of 0.04 in the parameters until you get a good result. These modules were designed a few years ago now, and not really designed for such high resolution data, though should still work. Though I am not entirely sure what you are attempting to do (e.g. purpose of data: remove building for DTM/ or create 3D model of the building DSM).

You will find that v.outlier is the biggest restriction on how many points you can process at one time. I was working with roughly 1.5pts/m² and found that I had to work in 1km tiles due to the v.outlier restriction. Something to be wary of when you decrease the spline step incase you start getting errors.

For reference, I was using:
GRASS GIS (v.6.4.0svn, library Revision: 37101 (2009-05-10)) (windows version)

----- Original Message ----- From: "kaipi" <mapcollect@gmx.net>
To: <grass-user@lists.osgeo.org>
Sent: Friday, October 30, 2009 12:43 PM
Subject: [GRASS-user] Problem with Lidar Tools

Dear list,

I am quite new to Grass and need to generate a DSM from Lidar data. Here is
my workflow so far:

v.in.ascii input=f:\lidar_test\single.csv output=single fs=, x=1 y=2 z=3 -z
-b -t --o
v.build single
g.region vect=single
v.in.ascii input=f:\lidar_test\first.csv output=first fs=, x=1 y=2 z=3 -z -b
-t --o
v.outlier input=single output=inlier_s outlier=outlier_s thres_o=5 soe=1
son=1 lambda_i=0.1 --o
v.outlier input=first output=inlier_f outlier=outlier_f thres_o=5 soe=1
son=1 lambda_i=0.1 --o
v.lidar.edgedetection input=inlier_s output=edgedetected see=400 sen=400
lambda_g=0.01 tgh=6 tgl=3 theta_g=0.26 lambda_r=1 --o
v.lidar.growing input=edgedetected output=growing first=inlier_f tj=0.25
td=0.6 --o
v.lidar.correction input=growing output=classified terrain=terrain sce=5
scn=5 lambda_c=1 tch=2 tcl=1 --o
v.lidar.correction input=classified output=classified_it2
terrain=terrain_it2 sce=5 scn=5 lambda_c=1 tch=2 tcl=1 --o
v.build terrain_it2
v.out.ogr in=terrain_it2 dsn=F:\lidar_test\terrain_it2 format=ESRI_Shapefile
type=point lco=SHPT=POINTZ -e

v.lidar.edgedetection classifies the data into cat 1 and cat 2 (=Terrain or
Edge ?). This seams to work. The next step is v.lidar.growing. This tool
should classify into 4 categories: TERRAIN SINGLE PULSE, TERRAIN DOUBLE
PULSE, OBJECT SINGLE PULSE or OBJECT DOUBLE PULSE. But this does not happen.
The cats still remain the same (cat1 and cat2) and the output looks
identical to the output from v.lidar.edgedetection. v.lidar.growing seams to
have no effect.
Am I doing something wrong ?

I have another problem with the parameters of the lidar tools (although I
read Brovellis "Managing and processing LIDAR data within GRASS"). Can you
give me some hints how to adjust the default values to very high res Lidar
data (=50 points/m²). I raised see and sen parameter in
v.lidar.edgedetection to 400 with the result, that the detected edges are
now so wide, that they cover complete buildings. This way I can get rid of
the most buildings but the result is not really satisfying and I guess the
problem is false classification of v.lidar.growing

Let me know if you need more infos.

I am using GRass 6.3.0 on Windows. Can I expect improvements switching to
6.4 or switching to Linux ?

Thank you very much !!

kaipi

--
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On Fri, Oct 30, 2009 at 1:43 PM, kaipi <mapcollect@gmx.net> wrote:

I am quite new to Grass and need to generate a DSM from Lidar data. Here is
my workflow so far:

...

v.lidar.edgedetection classifies the data into cat 1 and cat 2 (=Terrain or
Edge ?). This seams to work.

Since you use 6.3 there is some confusion which has been fixed in 6.4 and
later. A minute ago I have backported the correction for numbering of
terrain classification which is correctly as follows:

TERRAIN = 1
EDGE = 2
UNKNOWN = 3

(see also
http://grass.osgeo.org/grass64/manuals/html64_user/v.lidar.edgedetection.html
)

The next step is v.lidar.growing. This tool
should classify into 4 categories: TERRAIN SINGLE PULSE, TERRAIN DOUBLE
PULSE, OBJECT SINGLE PULSE or OBJECT DOUBLE PULSE. But this does not happen.
The cats still remain the same (cat1 and cat2) and the output looks
identical to the output from v.lidar.edgedetection. v.lidar.growing seams to
have no effect.
Am I doing something wrong ?

Would you mind to update to 6.4? We have made a couple of fixes since 6.3.
If the problem persists, we could check it.

Markus

Hi John,

On Sat, Oct 31, 2009 at 12:39 PM, John Tate <john.tate@ntlworld.com> wrote:

Hi Kaipi,

I've only been doing rural LiDAR processing, so can't help regards building
removal for the DTM.

One thing that isn't mentioned in the Brovelli, 2004 article or the online
documention on the wiki, is that spline 'step' relates to metres (1 step =
1m). Obvious I know, but wasn't to me when I started fiddling with the
parametersand the LiDAR data for the first time. Therefore:
-see and sen parameter in v.lidar.edgedetection to 400
is 400m! and hence:
-the detected edges are now so wide, that they cover complete buildings

The spline step parameters should be double the average distance between
points. So for 50pts/m² the spline steps chould be 0.04 (2*(1/50)) for
example. Play with these either side of 0.04 in the parameters until you get
a good result. These modules were designed a few years ago now, and not
really designed for such high resolution data, though should still work.
Though I am not entirely sure what you are attempting to do (e.g. purpose of
data: remove building for DTM/ or create 3D model of the building DSM).

You will find that v.outlier is the biggest restriction on how many points
you can process at one time. I was working with roughly 1.5pts/m² and found
that I had to work in 1km tiles due to the v.outlier restriction. Something
to be wary of when you decrease the spline step incase you start getting
errors.

For reference, I was using:
GRASS GIS (v.6.4.0svn, library Revision: 37101 (2009-05-10)) (windows
version)

These comments are very intesting!

(Un)related: I have started a small, incomplete, Lidar tutorial:
http://grass.osgeo.org/wiki/LIDAR#Micro-tutorial_for_LIDAR_data_analysis

It would be great if you could integrate your comments in this Wiki
page (Wiki syntax is pretty easy) for the benefit of other users. In
the mailing list archive things get easily "lost".

thanks
Markus

Thanks for your help ! Unfortunately I still don't get satisfying results
with the Lidar tools. Here is what I have done so far:

- Updated to 6.4 on Windows: v.outlier doesn't work (see my post in Win
Grass forum)
- Installed Grass 6.4 RC 5 on Ubuntu (Ubuntu package): same results like on
Windows Grass 6.3
- Decreased spline steps to 0.04: v.outlier and v.lidar.edgedetection give
errors. My results are better the higher the spline steps are (> 20).
Brovelli recommends spline step 3 up to 4 times of the planimetric
resolution. AFAIK planimetric resolution means points per m². If I have 50
pts/m² this would mean a spline step of 200 ?? With spline steps about 20 I
get nice edges and with spline step of 400 complete buildings are detected
as edges.
- Tried the Lidar demo data (nc_spm_08_2008_may18) and followed the
instructions on the Micro-tutorial_for_LIDAR_data_analysis:
v.lidar.edgedetection took so long, that I canceled process after 1 h (input
file has only 2000-3000 points - so something must be wrong)

I have also a problem to understand the definitions of first and last return
data. Here is a part of my Lidar data (ASCII format converted from raw LIdar
binary):

0 lon lat height intensity last first
1 3360422.27 5825275.62 37.16 255 1 1
2 3360421.94 5825275.60 38.21 56 0 1
3 3360422.48 5825275.60 37.18 255 1 0
4 3360422.17 5825275.58 38.18 141 0 1
5 3360422.65 5825275.58 37.26 255 1 0
6 3360422.84 5825275.56 37.31 255 1 1
7 3360423.05 5825275.54 37.32 255 1 1
8 3360423.36 5825275.52 37.13 255 1 1
9 3360423.06 5825275.50 38.11 12 0 1
10 3360423.60 5825275.50 37.09 255 1 0
11 3360423.70 5825275.49 37.32 255 1 1

First and last returns can be true (1) or false (0) or both. My
understanding is, that all points that have first return=true are first
returns and all returns that have last=true are last returns. When first and
last are true we have a single pulse otherwise we have double pulses.
If I understand the microtutorial correctly I need for v.lidar.growing as
input the last return single pulses (last=true and first=false) and as first
all pulses with first=true.
But I get better results when I use as input all last return pulses (only
last=true) and as input only the first single pulses (first=true and
last=false).

I still have the problem that v.lidar.growing does not change categories.
Output has only 2 categories - same as output of v.lidar.edgedetection.

I have attached two screenshots of my results so far (using the parameters
in my first post). I have not yet run v.surf.bspline.

http://n2.nabble.com/file/n3928180/lidar_before_after.jpg

Classification after v.lidar.edgedetection:
http://n2.nabble.com/file/n3928180/edgedetected.jpg

Any ideas regarding v.lidar.growing ?

Thanks - Kaipi

--
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Sent from the Grass - Users mailing list archive at Nabble.com.

Hi Kaipi,

Planimetric/horizontal resolution is essentially the end resolution of the data (grid resolution).
For example:
If you have 2pt/m² (on average the distance between points is 0.5m (1/2)), the end resolution is 0.5m.
So with 50pts/m², on average the distance between points is 1/50 = 0.02m.

You are absolutely right though (my mistake), Brovelli et al (2004) state 3 or 4 times the planimetric resolution for v.outlier and v.lidar.edgedetection, so 0.08 (m) would be a favourable spline step in their opinion, though not necessarily best for your data.

Have you tried using the r.in.xyz function on the first return data at the grid resolution of your data (0.02m or 0.04m so there are fewer gaps in the surface) to see what it looks like (maybe use v.surf.rst to fill any remaining gaps (see micro-tutorial)). This will give you an indication of the look of the detail that you have at the resolution of your data before you try to remove the objects.

I would also recommend using the top left or bottom right of your data (an area with a building), say a 20m x 20m area with the lower spline steps so you don't get the errors. I found that roughly 2 million points was about as much as the dbf driver could handle. However, I used (v.in.ascii -z -b -r ), never built topology (-b) and allowed it to create a table in points mode (not using -t). You need to connect the database first (v6.4) to prevent the error in later modules (ERROR: Unable to read name of database):

#connect database (has to be manually created). Do before importing data.

db.connect driver=dbf database='$GISDBASE/$LOCATION_NAME/$MAPSET/dbf/'

#and display (has to be a separate command and displayed or it does not work! bug anyone?)

db.connect -p

I'm afraid I have not seen that type of LiDAR data before, so cannot help there. I've only dealt with pure first and last return data (xyzixyzi).

Also, I cannot comment on the v.lidar.growing issue as I never looked into the data tables. Hopefully Markus can help you there.

Hope this helps.

Cheers

John

----- Original Message ----- From: "kaipi" <mapcollect@gmx.net>
To: <grass-user@lists.osgeo.org>
Sent: Sunday, November 01, 2009 7:20 PM
Subject: Re: [GRASS-user] Problem with Lidar Tools

Thanks for your help ! Unfortunately I still don't get satisfying results
with the Lidar tools. Here is what I have done so far:

- Updated to 6.4 on Windows: v.outlier doesn't work (see my post in Win
Grass forum)
- Installed Grass 6.4 RC 5 on Ubuntu (Ubuntu package): same results like on
Windows Grass 6.3
- Decreased spline steps to 0.04: v.outlier and v.lidar.edgedetection give
errors. My results are better the higher the spline steps are (> 20).
Brovelli recommends spline step 3 up to 4 times of the planimetric
resolution. AFAIK planimetric resolution means points per m². If I have 50
pts/m² this would mean a spline step of 200 ?? With spline steps about 20 I
get nice edges and with spline step of 400 complete buildings are detected
as edges.
- Tried the Lidar demo data (nc_spm_08_2008_may18) and followed the
instructions on the Micro-tutorial_for_LIDAR_data_analysis:
v.lidar.edgedetection took so long, that I canceled process after 1 h (input
file has only 2000-3000 points - so something must be wrong)

I have also a problem to understand the definitions of first and last return
data. Here is a part of my Lidar data (ASCII format converted from raw LIdar
binary):

0 lon lat height intensity last first
1 3360422.27 5825275.62 37.16 255 1 1
2 3360421.94 5825275.60 38.21 56 0 1
3 3360422.48 5825275.60 37.18 255 1 0
4 3360422.17 5825275.58 38.18 141 0 1
5 3360422.65 5825275.58 37.26 255 1 0
6 3360422.84 5825275.56 37.31 255 1 1
7 3360423.05 5825275.54 37.32 255 1 1
8 3360423.36 5825275.52 37.13 255 1 1
9 3360423.06 5825275.50 38.11 12 0 1
10 3360423.60 5825275.50 37.09 255 1 0
11 3360423.70 5825275.49 37.32 255 1 1

First and last returns can be true (1) or false (0) or both. My
understanding is, that all points that have first return=true are first
returns and all returns that have last=true are last returns. When first and
last are true we have a single pulse otherwise we have double pulses.
If I understand the microtutorial correctly I need for v.lidar.growing as
input the last return single pulses (last=true and first=false) and as first
all pulses with first=true.
But I get better results when I use as input all last return pulses (only
last=true) and as input only the first single pulses (first=true and
last=false).

I still have the problem that v.lidar.growing does not change categories.
Output has only 2 categories - same as output of v.lidar.edgedetection.

I have attached two screenshots of my results so far (using the parameters
in my first post). I have not yet run v.surf.bspline.

http://n2.nabble.com/file/n3928180/lidar_before_after.jpg

Classification after v.lidar.edgedetection:
http://n2.nabble.com/file/n3928180/edgedetected.jpg

Any ideas regarding v.lidar.growing ?

Thanks - Kaipi

--
View this message in context: http://n2.nabble.com/Problem-with-Lidar-Tools-tp3918684p3928180.html
Sent from the Grass - Users mailing list archive at Nabble.com.

Hi Kaipi,

I've only been doing rural LiDAR processing, so can't help regards building
removal for the DTM.

One thing that isn't mentioned in the Brovelli, 2004 article or the online
documention on the wiki, is that spline 'step' relates to metres (1 step =
1m). Obvious I know, but wasn't to me when I started fiddling with the
parametersand the LiDAR data for the first time. Therefore:
-see and sen parameter in v.lidar.edgedetection to 400
is 400m! and hence:
-the detected edges are now so wide, that they cover complete buildings

The spline step parameters should be double the average distance between
points. So for 50pts/m² the spline steps chould be 0.04 (2*(1/50)) for
example. Play with these either side of 0.04 in the parameters until you get
a good result. These modules were designed a few years ago now, and not
really designed for such high resolution data, though should still work.
Though I am not entirely sure what you are attempting to do (e.g. purpose of
data: remove building for DTM/ or create 3D model of the building DSM).

You will find that v.outlier is the biggest restriction on how many points
you can process at one time. I was working with roughly 1.5pts/m² and found
that I had to work in 1km tiles due to the v.outlier restriction. Something
to be wary of when you decrease the spline step incase you start getting
errors.

For reference, I was using:
GRASS GIS (v.6.4.0svn, library Revision: 37101 (2009-05-10)) (windows
version)

----- Original Message ----- From: "kaipi" <mapcollect@gmx.net>
To: <grass-user@lists.osgeo.org>
Sent: Friday, October 30, 2009 12:43 PM
Subject: [GRASS-user] Problem with Lidar Tools

Dear list,

I am quite new to Grass and need to generate a DSM from Lidar data. Here is
my workflow so far:

v.in.ascii input=f:\lidar_test\single.csv output=single fs=, x=1 y=2 z=3 -z
-b -t --o
v.build single
g.region vect=single
v.in.ascii input=f:\lidar_test\first.csv output=first fs=, x=1 y=2 z=3 -z -b
-t --o
v.outlier input=single output=inlier_s outlier=outlier_s thres_o=5 soe=1
son=1 lambda_i=0.1 --o
v.outlier input=first output=inlier_f outlier=outlier_f thres_o=5 soe=1
son=1 lambda_i=0.1 --o
v.lidar.edgedetection input=inlier_s output=edgedetected see=400 sen=400
lambda_g=0.01 tgh=6 tgl=3 theta_g=0.26 lambda_r=1 --o
v.lidar.growing input=edgedetected output=growing first=inlier_f tj=0.25
td=0.6 --o
v.lidar.correction input=growing output=classified terrain=terrain sce=5
scn=5 lambda_c=1 tch=2 tcl=1 --o
v.lidar.correction input=classified output=classified_it2
terrain=terrain_it2 sce=5 scn=5 lambda_c=1 tch=2 tcl=1 --o
v.build terrain_it2
v.out.ogr in=terrain_it2 dsn=F:\lidar_test\terrain_it2 format=ESRI_Shapefile
type=point lco=SHPT=POINTZ -e

v.lidar.edgedetection classifies the data into cat 1 and cat 2 (=Terrain or
Edge ?). This seams to work. The next step is v.lidar.growing. This tool
should classify into 4 categories: TERRAIN SINGLE PULSE, TERRAIN DOUBLE
PULSE, OBJECT SINGLE PULSE or OBJECT DOUBLE PULSE. But this does not happen.
The cats still remain the same (cat1 and cat2) and the output looks
identical to the output from v.lidar.edgedetection. v.lidar.growing seams to
have no effect.
Am I doing something wrong ?

I have another problem with the parameters of the lidar tools (although I
read Brovellis "Managing and processing LIDAR data within GRASS"). Can you
give me some hints how to adjust the default values to very high res Lidar
data (=50 points/m²). I raised see and sen parameter in
v.lidar.edgedetection to 400 with the result, that the detected edges are
now so wide, that they cover complete buildings. This way I can get rid of
the most buildings but the result is not really satisfying and I guess the
problem is false classification of v.lidar.growing

Let me know if you need more infos.

I am using GRass 6.3.0 on Windows. Can I expect improvements switching to
6.4 or switching to Linux ?

Thank you very much !!

kaipi

--
View this message in context:
http://n2.nabble.com/Problem-with-Lidar-Tools-tp3918684p3918684.html
Sent from the Grass - Users mailing list archive at Nabble.com.
_______________________________________________
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Hi All,

I am having similar problems to Kaipi in regards to the v.lidar.growing
stage of LiDAR processing. I'm running GRASS 6.4.0 on Windows. My dataset is
a 1km by 1km tile of LiDAR with a point spacing of about 1.5 points/m2, so a
total of about 1.5 million in the area of interest.

Thus far I've imported the points with v.in.ascii, split into the first
returns and last returns. I interpreted these two classes as follows (please
correct me if I'm wrong)...

First returns: all first returns, including single returns where only one
return has been received.
Last returns: all single returns, and the last return where multiple returns
have been received.

Then I removed outliers as per the micro-tutorial on the GRASS wiki.

Next I ran v.lidar.edgedetection on the last returns with the default
parameters.

This resulted in a reasonable looking classification of edge (2), not-edge
(1) and uncertain (3). The edges of the buildings and trees are quite well
defined, as shown in the image below, so far so good...

...however, when I run v.lidar.growing (default parameters), the output I
get is exactly the same as the edgedetection output. The points are
classified identically into 1, 2 and 3, and there appears to have been no
change in the classification. I've tried varying the growing parameters, and
changing the region resolution, but the output is always the same.

I've trawled through the forums to no avail, so any advice would be greatly
appreciated.

Thanks,
Ben

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On Tue, Dec 7, 2010 at 7:53 PM, benmarillier
<ben.marillier@water.wa.gov.au> wrote:

Hi All,

I am having similar problems to Kaipi in regards to the v.lidar.growing
stage of LiDAR processing. I'm running GRASS 6.4.0 on Windows. My dataset is
a 1km by 1km tile of LiDAR with a point spacing of about 1.5 points/m2, so a
total of about 1.5 million in the area of interest.

Thus far I've imported the points with v.in.ascii, split into the first
returns and last returns. I interpreted these two classes as follows (please
correct me if I'm wrong)...

First returns: all first returns, including single returns where only one
return has been received.
Last returns: all single returns, and the last return where multiple returns
have been received.

Then I removed outliers as per the micro-tutorial on the GRASS wiki.

Next I ran v.lidar.edgedetection on the last returns with the default
parameters.

This resulted in a reasonable looking classification of edge (2), not-edge
(1) and uncertain (3). The edges of the buildings and trees are quite well
defined, as shown in the image below, so far so good...

...however, when I run v.lidar.growing (default parameters), the output I
get is exactly the same as the edgedetection output. The points are
classified identically into 1, 2 and 3, and there appears to have been no
change in the classification. I've tried varying the growing parameters, and
changing the region resolution, but the output is always the same.

I've trawled through the forums to no avail, so any advice would be greatly
appreciated.

Thanks,
Ben

Hi.

Is this urban, rural, or mixed land use?

Mark

Hi Mark,

It's mostly urban, with large buildings. There are some areas of parkland
with scattered trees.

Ben
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Hi all,

I want to use Lidar Tools but I have problems to define first and last
return.
I have four classes of return in my lidar data :
- single return
- first of many return
- last of many return
- intermediate
Can you help me to define first and last return with this type of data?
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